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Publications

Koyanagi-Aoi M, Ohnuki M, Takahashi K, et al. "Differentiation-defective phenotypes revealed by large-scale analyses of human pluripotent stem cells." Proc. Natl. Acad. Sci. U.S.A.. 2013;110(51):20569-74.
Ryan CJ, Cimermančič P, Szpiech ZA, Sali A, Hernandez RD, Krogan NJ. "High-resolution network biology: connecting sequence with function." Nat. Rev. Genet.. 2013;14(12):865-79.
Griffiths S, Baraniak PR, Copland IB, Nerem RM, McDevitt TC. "Human platelet lysate stimulates high-passage and senescent human multipotent mesenchymal stromal cell growth and rejuvenation in vitro." Cytotherapy. 2013;15(12):1469-83.
Surma MA, Klose C, Peng D, et al. "A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress." Mol. Cell. 2013;51(4):519-30.
Braberg H, Jin H, Moehle EA, et al. "From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II." Cell. 2013;154(4):775-88.
Zhang C, Wang J, Hanspers K, Xu D, Chen L, Pico AR. "NOA: a cytoscape plugin for network ontology analysis." Bioinformatics. 2013;29(16):2066-7.
Anand P, Brown JD, Lin CY, et al. "BET bromodomains mediate transcriptional pause release in heart failure." Cell. 2013;154(3):569-82.
Aristizabal MJ, Negri GLuca, Benschop JJ, Holstege FCP, Krogan NJ, Kobor MS. "High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8." PLoS Genet.. 2013;9(8):e1003758.
Kaneko S, Yamanaka S. "To be immunogenic, or not to be: that's the iPSC question." Cell Stem Cell. 2013;12(4):385-6.
Albin JS, Anderson JS, Johnson JR, et al. "Dispersed sites of HIV Vif-dependent polyubiquitination in the DNA deaminase APOBEC3F." J. Mol. Biol.. 2013;425(7):1172-82.
Fu J-D, Stone NR, Liu L, et al. "Direct reprogramming of human fibroblasts toward a cardiomyocyte-like state." Stem Cell Reports. 2013;1(3):235-47.
Kamakura T, Makiyama T, Sasaki K, et al. "Ultrastructural maturation of human-induced pluripotent stem cell-derived cardiomyocytes in a long-term culture." Circ. J.. 2013;77(5):1307-14.
Yamashita A, Liu S, Woltjen K, et al. "Cartilage tissue engineering identifies abnormal human induced pluripotent stem cells." Sci Rep. 2013;3:1978.
Ryan CJ, Krogan NJ, Cunningham P, Cagney G. "All or nothing: protein complexes flip essentiality between distantly related eukaryotes." Genome Biol Evol. 2013;5(6):1049-59.
Schulze-Gahmen U, Upton H, Birnberg A, et al. "The AFF4 scaffold binds human P-TEFb adjacent to HIV Tat." Elife. 2013;2:e00327.
Kreitzer FR, Salomonis N, Sheehan A, et al. "A robust method to derive functional neural crest cells from human pluripotent stem cells." Am J Stem Cells. 2013;2(2):119-31.
Capra JA, Hubisz MJ, Kostka D, Pollard KS, Siepel A. "A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes." PLoS Genet.. 2013;9(8):e1003684.
Beltrao P, Bork P, Krogan NJ, van Noort V. "Evolution and functional cross-talk of protein post-translational modifications." Mol. Syst. Biol.. 2013;9:714.
Mathur A, Loskill P, Hong S, et al. "Human induced pluripotent stem cell-based microphysiological tissue models of myocardium and liver for drug development." Stem Cell Res Ther. 2013;4 Suppl 1:S14.

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