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Publications

Tanabe K, Nakamura M, Narita M, Takahashi K, Yamanaka S. "Maturation, not initiation, is the major roadblock during reprogramming toward pluripotency from human fibroblasts." Proc. Natl. Acad. Sci. U.S.A.. 2013;110(30):12172-9.
Wythe JD, Dang LTH, W Devine P, et al. "ETS factors regulate Vegf-dependent arterial specification." Dev. Cell. 2013;26(1):45-58.
Swaney DL, Beltrao P, Starita L, et al. "Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation." Nat. Methods. 2013;10(7):676-82.
Chou S, Upton H, Bao K, et al. "HIV-1 Tat recruits transcription elongation factors dispersed along a flexible AFF4 scaffold." Proc. Natl. Acad. Sci. U.S.A.. 2013;110(2):E123-31.
Watanabe A, Yamada Y, Yamanaka S. "Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier." Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2013;368(1609):20120292.
Yamana R, Iwasaki M, Wakabayashi M, Nakagawa M, Yamanaka S, Ishihama Y. "Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot NanoLC-MS/MS analysis with meter-scale monolithic silica columns." J. Proteome Res.. 2013;12(1):214-21.
Guénolé A, Srivas R, Vreeken K, et al. "Dissection of DNA damage responses using multiconditional genetic interaction maps." Mol. Cell. 2013;49(2):346-58.
Fraser JS, Gross JD, Krogan NJ. "From systems to structure: bridging networks and mechanism." Mol. Cell. 2013;49(2):222-31.
Yamanaka S. "Shinya Yamanaka: purveyor of pluripotency. Interview by Ruth Williams." Circ. Res.. 2013;112(2):233-5.
Vedantham V, Evangelista M, Huang Y, Srivastava D. "Spatiotemporal regulation of an Hcn4 enhancer defines a role for Mef2c and HDACs in cardiac electrical patterning." Dev. Biol.. 2013;373(1):149-62.
Li W, Jiang K, Wei W, Shi Y, Ding S. "Chemical approaches to studying stem cell biology." Cell Res.. 2013;23(1):81-91.
Dutkowski J, Kramer M, Surma MA, et al. "A gene ontology inferred from molecular networks." Nat. Biotechnol.. 2013;31(1):38-45.
Kim DYoung, Kwon E, Hartley PD, et al. "CBFβ stabilizes HIV Vif to counteract APOBEC3 at the expense of RUNX1 target gene expression." Mol. Cell. 2013;49(4):632-44.
Okano H, Nakamura M, Yoshida K, et al. "Steps toward safe cell therapy using induced pluripotent stem cells." Circ. Res.. 2013;112(3):523-33.
Fujishiro S-hei, Nakano K, Mizukami Y, et al. "Generation of naive-like porcine-induced pluripotent stem cells capable of contributing to embryonic and fetal development." Stem Cells Dev.. 2013;22(3):473-82.
Ma T, Xie M, Laurent T, Ding S. "Progress in the reprogramming of somatic cells." Circ. Res.. 2013;112(3):562-74.
Kinney MA, McDevitt TC. "Emerging strategies for spatiotemporal control of stem cell fate and morphogenesis." Trends Biotechnol.. 2013;31(2):78-84.
Suri S, Singh A, Nguyen AH, Bratt-Leal AM, McDevitt TC, Lu H. "Microfluidic-based patterning of embryonic stem cells for in vitro development studies." Lab Chip. 2013;13(23):4617-24.
Payer B, Rosenberg M, Yamaji M, et al. "Tsix RNA and the germline factor, PRDM14, link X reactivation and stem cell reprogramming." Mol. Cell. 2013;52(6):805-18.
Kliegman JI, Fiedler D, Ryan CJ, et al. "Chemical genetics of rapamycin-insensitive TORC2 in S. cerevisiae." Cell Rep. 2013;5(6):1725-36.
McDevitt TC. "Scalable culture of human pluripotent stem cells in 3D." Proc. Natl. Acad. Sci. U.S.A.. 2013;110(52):20852-3.
Yamanaka S. "The winding road to pluripotency (Nobel Lecture)." Angew. Chem. Int. Ed. Engl.. 2013;52(52):13900-9.
Capra JA, Erwin GD, McKinsey G, Rubenstein JLR, Pollard KS. "Many human accelerated regions are developmental enhancers." Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2013;368(1632):20130025.

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