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Publications

Pico AR, Bader GD, Demchak B, et al. "The Cytoscape app article collection." F1000Res. 2014;3:138.
Shimamoto R, Amano N, Ichisaka T, Watanabe A, Yamanaka S, Okita K. "Generation and characterization of induced pluripotent stem cells from Aid-deficient mice." PLoS ONE. 2014;9(4):e94735.
Thomas S, Underwood JG, Tseng E, Holloway AK. "Long-read sequencing of chicken transcripts and identification of new transcript isoforms." PLoS ONE. 2014;9(4):e94650.
Mahon C, Krogan NJ, Craik CS, Pick E. "Cullin E3 ligases and their rewiring by viral factors." Biomolecules. 2014;4(4):897-930.
Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL. "Profile hidden Markov models for the detection of viruses within metagenomic sequence data." PLoS ONE. 2014;9(8):e105067.
Williams AG, Thomas S, Wyman SK, Holloway AK. "RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis." Curr Protoc Hum Genet. 2014;83:11.13.1-11.13.20.
Morris JH, Kuchinsky A, Ferrin TE, Pico AR. "enhancedGraphics: a Cytoscape app for enhanced node graphics." F1000Res. 2014;3:147.
Tanabe K, Takahashi K, Yamanaka S. "Induction of pluripotency by defined factors." Proc. Jpn. Acad., Ser. B, Phys. Biol. Sci.. 2014;90(3):83-96.
Ngangan AV, Waring JC, Cooke MT, Mandrycky CJ, McDevitt TC. "Soluble factors secreted by differentiating embryonic stem cells stimulate exogenous cell proliferation and migration." Stem Cell Res Ther. 2014;5(1):26.
Bruneau BG. "Finding a niche for cardiac precursors." Elife. 2014;3:e02993.
Li W, Li K, Wei W, Ding S. "Chemical approaches to stem cell biology and therapeutics." Cell Stem Cell. 2013;13(3):270-83.
Conklin BR. "Sculpting genomes with a hammer and chisel." Nat. Methods. 2013;10(9):839-40.
Ladau J, Sharpton TJ, Finucane MM, et al. "Global marine bacterial diversity peaks at high latitudes in winter." ISME J. 2013;7(9):1669-77.
Pandey RRaman, Tokuzawa Y, Yang Z, et al. "Tudor domain containing 12 (TDRD12) is essential for secondary PIWI interacting RNA biogenesis in mice." Proc. Natl. Acad. Sci. U.S.A.. 2013;110(41):16492-7.
Turner M, Leslie S, Martin NG, et al. "Toward the development of a global induced pluripotent stem cell library." Cell Stem Cell. 2013;13(4):382-4.
Healy KE, McDevitt TC, Murphy WL, Nerem RM. "Engineering the emergence of stem cell therapeutics." Sci Transl Med. 2013;5(207):207ed17.
Luna-Zurita L, Bruneau BG. "Chromatin modulators as facilitating factors in cellular reprogramming." Curr. Opin. Genet. Dev.. 2013;23(5):556-61.
Lin C, Yu C, Ding S. "Toward directed reprogramming through exogenous factors." Curr. Opin. Genet. Dev.. 2013;23(5):519-25.
Bratt-Leal AM, Nguyen AH, Hammersmith KA, Singh A, McDevitt TC. "A microparticle approach to morphogen delivery within pluripotent stem cell aggregates." Biomaterials. 2013;34(30):7227-35.
Srivastava D, Berry EC. "Cardiac reprogramming: from mouse toward man." Curr. Opin. Genet. Dev.. 2013;23(5):574-8.

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